Re: potentially stupid question -- no, not really at all
Seems quite sensible.
However, as you hypothesized, gravitationally bound systems defeat the expansion. This means forces stronger than gravity -- the strong nuclear force, electromagnetic force -- stomp all over the cosmic expansion. No chance for our bodily molecules or atoms to take part.
I'd have to look it up to be sure, but I believe that clusters of galaxies, and even superclusters, are bound together by gravity such that the individual galaxies inside the cluster are not receding from each other.